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zeekayandHanzo Dev 1cd0cd7644 semantic: the pipeline, end to end
The first commit was the shape. This is the implementation: every stage of the
pipeline, the graph and its measures, the type system over it, entailment,
deduplication and conflict resolution, the decision layer, the stores and the
export formats. Twenty-six thousand lines of Go and sixteen thousand of tests,
against no dependency but the standard library.

Where the Python reaches for torch, spacy or a database driver, the Go states
an interface and reports what is missing rather than pretending. A caller can
tell "this build cannot serve that" from "nobody has heard of it", which is the
difference between a port and a stub. The deterministic paths are complete and
are what the tests exercise; the model-shaped ones are one adapter away.

Porting a bug is not parity, so several places now disagree with the original
on purpose. The JSON repair that closed a truncated reply counted each bracket
kind separately and closed them backwards on the one input it exists for; it
now works off a stack and ignores brackets inside strings. The entity patterns
joined words with \s, so a heading ran into the sentence beneath it and became
one name while the real relation was lost; a name is separated by horizontal
space now. Eigenvector centrality ran plain power iteration, which on a
bipartite graph swings between the two ends of a sign-paired eigenvalue forever
and reported every node in a star as equally central; it iterates with A+I,
which moves no eigenvector and settles. Similarity summed its weighted parts in
map order, and float addition is not associative, so the same comparison scored
differently between runs and duplicate detection returned a different answer
each time. An inferred ontology named object-property endpoints by raw source
type and data-property endpoints by class, so the schema referred to classes it
did not contain. A property with no IRI of its own was minted as a class and
came back Pascal-cased, renaming the term on the way out of the document.

The command built a pipeline with every stage nil and panicked on each
invocation. It is now the composition the package documents, and Run reports a
missing ingester instead of dereferencing it.

Co-authored-by: Hanzo Dev <[email protected]>
2026-09-08 12:57:59 -07:00

291 lines
9.9 KiB
Go

package extract
import (
"errors"
"reflect"
"strings"
"testing"
)
// The ontology every schema test reads, matching the one the Python suite
// uses: three concepts, one predicate constrained at both ends, one
// constrained by bare strings, one unconstrained.
var ont = Ontology{
Classes: []Class{{Name: "Person"}, {Name: "Organization"}, {Label: "City"}},
Properties: []Property{
{Name: "worksAt", Domain: Names{"Person"}, Range: Names{"Organization"}},
{Name: "locatedIn", Domain: Names{"Organization"}, Range: Names{"City"}},
{Name: "knows"},
},
}
func person() Entity { return Entity{Text: "Alice", Label: "Person", End: 5, Score: 1} }
func org() Entity { return Entity{Text: "Acme", Label: "Organization", End: 4, Score: 1} }
func city() Entity { return Entity{Text: "Paris", Label: "City", End: 5, Score: 1} }
func product() Entity { return Entity{Text: "Widget", Label: "Product", End: 6, Score: 1} }
func rel(s Entity, p string, o Entity) Relation {
return Relation{Subject: s, Predicate: p, Object: o, Score: 1}
}
func TestNewSchema(t *testing.T) {
s := NewSchema(ont)
want := []string{"City", "Organization", "Person"}
if !reflect.DeepEqual(s.Concepts, want) {
t.Errorf("concepts = %v, want %v", s.Concepts, want)
}
for _, name := range []string{"worksAt", "locatedIn", "knows"} {
if !s.Pred(name) {
t.Errorf("Pred(%q) = false, want true", name)
}
}
if got := s.Predicates["worksAt"]; !reflect.DeepEqual(got.Domain, []string{"Person"}) ||
!reflect.DeepEqual(got.Range, []string{"Organization"}) {
t.Errorf("worksAt = %+v, want domain [Person] range [Organization]", got)
}
// A property with no stated domain or range restricts nothing.
if got := s.Predicates["knows"]; got.Domain != nil || got.Range != nil {
t.Errorf("knows = %+v, want both ends unconstrained", got)
}
}
func TestNewSchemaFoldsEndpointTypes(t *testing.T) {
// A type that appears only as a range is still a concept: a
// class-frequency cutoff during induction must not make a property's own
// range off-vocabulary.
s := NewSchema(Ontology{
Classes: []Class{{Name: "Person"}},
Properties: []Property{{Name: "worksFor", Domain: Names{"Person"}, Range: Names{"Org"}}},
})
if !s.Concept("Org") {
t.Fatalf("concepts = %v, want Org folded in from the range", s.Concepts)
}
if !s.Allows("Person", "worksFor", "Org") {
t.Error("Allows(Person, worksFor, Org) = false, want true")
}
}
func TestNewSchemaThingIsUnconstrained(t *testing.T) {
// An ontology generator writes owl:Thing when it cannot resolve an
// endpoint's type. That means "any concept", not a concept named Thing,
// so keeping it would reject every real endpoint.
for _, universal := range []string{"owl:Thing", "Thing", "http://www.w3.org/2002/07/owl#Thing"} {
s := NewSchema(Ontology{
Classes: []Class{{Name: "Person"}, {Name: "Organization"}},
Properties: []Property{{Name: "relatedTo", Domain: Names{universal}, Range: Names{universal}}},
})
p := s.Predicates["relatedTo"]
if p.Domain != nil || p.Range != nil {
t.Errorf("%s: relatedTo = %+v, want both ends unconstrained", universal, p)
}
if !s.Allows("Person", "relatedTo", "Organization") {
t.Errorf("%s: Allows(Person, relatedTo, Organization) = false, want true", universal)
}
}
}
func TestSchemaAllows(t *testing.T) {
s := NewSchema(ont)
for _, c := range []struct {
name string
sub, pred, obj string
want bool
}{
{"conforming", "Person", "worksAt", "Organization", true},
{"range violated", "Person", "worksAt", "City", false},
{"domain violated", "Organization", "worksAt", "Organization", false},
{"predicate off vocabulary", "Person", "founded", "Organization", false},
{"subject off vocabulary", "Product", "worksAt", "Organization", false},
{"object off vocabulary", "Person", "worksAt", "Product", false},
{"unconstrained predicate takes any concepts", "Person", "knows", "City", true},
{"unconstrained predicate still needs concepts", "Person", "knows", "Product", false},
} {
t.Run(c.name, func(t *testing.T) {
if got := s.Allows(c.sub, c.pred, c.obj); got != c.want {
t.Errorf("Allows(%q, %q, %q) = %v, want %v", c.sub, c.pred, c.obj, got, c.want)
}
})
}
}
func TestSchemaCheckEntities(t *testing.T) {
s := NewSchema(ont)
ok := s.Check(Set{Entities: []Entity{person(), org(), city()}})
if !ok.OK || ok.Score != 1 {
t.Errorf("conforming entities: OK=%v Score=%v, want true 1", ok.OK, ok.Score)
}
if ok.Counts["unknown"] != 0 || ok.Err() != nil {
t.Errorf("conforming entities: counts=%v err=%v", ok.Counts, ok.Err())
}
bad := s.Check(Set{Entities: []Entity{person(), product()}})
if bad.OK {
t.Error("off-vocabulary entity accepted, want rejected")
}
if bad.Score != 0.5 {
t.Errorf("Score = %v, want 0.5 (one of two conforming)", bad.Score)
}
if !reflect.DeepEqual(bad.Unknown, []string{"Product"}) {
t.Errorf("Unknown = %v, want [Product]", bad.Unknown)
}
if bad.Counts["known"] != 1 || bad.Counts["unknown"] != 1 {
t.Errorf("counts = %v, want known 1 unknown 1", bad.Counts)
}
if err := bad.Err(); !errors.Is(err, ErrInvalid) {
t.Errorf("Err() = %v, want it to wrap ErrInvalid", err)
} else if !strings.Contains(err.Error(), "Product") {
t.Errorf("Err() = %v, want the offending label named", err)
}
}
func TestSchemaCheckEmptyIsVacuouslyValid(t *testing.T) {
r := NewSchema(ont).Check(Set{})
if !r.OK || r.Score != 1 {
t.Errorf("OK=%v Score=%v, want true 1: nothing extracted breaks no rule", r.OK, r.Score)
}
}
func TestSchemaCheckRelations(t *testing.T) {
s := NewSchema(ont)
ok := s.Check(Set{Relations: []Relation{
rel(person(), "worksAt", org()),
rel(person(), "knows", city()),
}})
if !ok.OK || ok.Score != 1 {
t.Errorf("conforming relations: OK=%v Score=%v, want true 1", ok.OK, ok.Score)
}
bad := s.Check(Set{Relations: []Relation{
rel(person(), "worksAt", org()), // conforming
rel(person(), "founded", org()), // predicate off vocabulary
rel(person(), "worksAt", city()), // range violated
}})
if bad.OK {
t.Error("non-conforming relations accepted, want rejected")
}
if got, want := bad.Score, 1.0/3.0; got != want {
t.Errorf("Score = %v, want %v", got, want)
}
for k, want := range map[string]int{"conforming": 1, "offVocabulary": 1, "offDomain": 1, "torn": 0} {
if bad.Counts[k] != want {
t.Errorf("Counts[%q] = %d, want %d (all: %v)", k, bad.Counts[k], want, bad.Counts)
}
}
}
func TestSchemaCheckTornRelation(t *testing.T) {
// A relation missing an endpoint must be reported, not dereferenced.
r := NewSchema(ont).Check(Set{Relations: []Relation{
rel(person(), "worksAt", org()),
rel(person(), "worksAt", Entity{}),
}})
if r.OK {
t.Error("torn relation accepted, want rejected")
}
if r.Counts["torn"] != 1 || r.Counts["conforming"] != 1 {
t.Errorf("counts = %v, want torn 1 conforming 1", r.Counts)
}
}
func TestSchemaKeep(t *testing.T) {
s := NewSchema(ont)
kept := s.Keep(Set{
Entities: []Entity{person(), org(), product()},
Relations: []Relation{
rel(person(), "worksAt", org()), // keep
rel(person(), "founded", org()), // drop: predicate off vocabulary
rel(person(), "worksAt", city()), // drop: range violated
rel(person(), "knows", city()), // keep
rel(person(), "knows", Entity{}), // drop: torn
},
})
var labels []string
for _, e := range kept.Entities {
labels = append(labels, e.Label)
}
if !reflect.DeepEqual(labels, []string{"Person", "Organization"}) {
t.Errorf("kept labels = %v, want [Person Organization]", labels)
}
var preds []string
for _, r := range kept.Relations {
preds = append(preds, r.Predicate)
}
if !reflect.DeepEqual(preds, []string{"worksAt", "knows"}) {
t.Errorf("kept predicates = %v, want [worksAt knows]", preds)
}
}
func TestReadSchema(t *testing.T) {
// A generator writes a domain or range as a bare string, a list, or an
// object; all three name the same concept.
const doc = `{
"classes": [{"name": "Person"}, {"label": "City"}],
"properties": [
{"name": "worksAt", "domain": "Person", "range": ["Organization"]},
{"name": "livesIn", "domain": {"name": "Person"}, "range": {"label": "City"}},
{"label": "knows"}
]
}`
s, err := ReadSchema(strings.NewReader(doc))
if err != nil {
t.Fatalf("ReadSchema: %v", err)
}
if !reflect.DeepEqual(s.Concepts, []string{"City", "Organization", "Person"}) {
t.Errorf("concepts = %v", s.Concepts)
}
if !s.Allows("Person", "worksAt", "Organization") {
t.Error("string domain and list range did not build a usable predicate")
}
if !s.Allows("Person", "livesIn", "City") {
t.Error("object domain and range did not build a usable predicate")
}
// A property named only by its label is still a predicate.
if !s.Pred("knows") {
t.Error("Pred(knows) = false, want a label to stand in for a missing name")
}
}
func TestReadSchemaRejectsBadJSON(t *testing.T) {
if _, err := ReadSchema(strings.NewReader("not json")); err == nil {
t.Fatal("ReadSchema accepted a document that is not JSON")
}
}
func TestReadSchemaOddConstraints(t *testing.T) {
// Generators write a domain in shapes no specification promised. Each one
// still has to name concepts or the schema silently allows nothing.
for _, c := range []struct {
name string
domain string
want []string
}{
{"an object naming neither", `{"foo":1,"bar":2}`, []string{"bar", "foo"}},
{"a number", `42`, []string{"42"}},
{"null", `null`, nil},
{"an empty string", `""`, nil},
{"a list of objects", `[{"name":"Person"},{"label":"City"}]`, []string{"City", "Person"}},
{"duplicates", `["Person","Person"]`, []string{"Person"}},
} {
t.Run(c.name, func(t *testing.T) {
doc := `{"properties":[{"name":"p","domain":` + c.domain + `}]}`
s, err := ReadSchema(strings.NewReader(doc))
if err != nil {
t.Fatalf("ReadSchema: %v", err)
}
if got := s.Predicates["p"].Domain; !reflect.DeepEqual(got, c.want) {
t.Errorf("domain = %v, want %v", got, c.want)
}
for _, name := range c.want {
if !s.Concept(name) {
t.Errorf("%q is a domain but not a concept", name)
}
}
})
}
}