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zeekayandHanzo Dev 1cd0cd7644 semantic: the pipeline, end to end
The first commit was the shape. This is the implementation: every stage of the
pipeline, the graph and its measures, the type system over it, entailment,
deduplication and conflict resolution, the decision layer, the stores and the
export formats. Twenty-six thousand lines of Go and sixteen thousand of tests,
against no dependency but the standard library.

Where the Python reaches for torch, spacy or a database driver, the Go states
an interface and reports what is missing rather than pretending. A caller can
tell "this build cannot serve that" from "nobody has heard of it", which is the
difference between a port and a stub. The deterministic paths are complete and
are what the tests exercise; the model-shaped ones are one adapter away.

Porting a bug is not parity, so several places now disagree with the original
on purpose. The JSON repair that closed a truncated reply counted each bracket
kind separately and closed them backwards on the one input it exists for; it
now works off a stack and ignores brackets inside strings. The entity patterns
joined words with \s, so a heading ran into the sentence beneath it and became
one name while the real relation was lost; a name is separated by horizontal
space now. Eigenvector centrality ran plain power iteration, which on a
bipartite graph swings between the two ends of a sign-paired eigenvalue forever
and reported every node in a star as equally central; it iterates with A+I,
which moves no eigenvector and settles. Similarity summed its weighted parts in
map order, and float addition is not associative, so the same comparison scored
differently between runs and duplicate detection returned a different answer
each time. An inferred ontology named object-property endpoints by raw source
type and data-property endpoints by class, so the schema referred to classes it
did not contain. A property with no IRI of its own was minted as a class and
came back Pascal-cased, renaming the term on the way out of the document.

The command built a pipeline with every stage nil and panicked on each
invocation. It is now the composition the package documents, and Run reports a
missing ingester instead of dereferencing it.

Co-authored-by: Hanzo Dev <[email protected]>
2026-09-08 12:57:59 -07:00

252 lines
7.9 KiB
Go

package ontology
import (
"errors"
"reflect"
"strings"
"testing"
"time"
)
// observed is the instance graph the inference tests read: two people, two
// companies, and one type seen only once.
func observed() Graph {
return Graph{
Entities: []Entity{
{ID: "1", Type: "person", Name: "Ada", Attrs: map[string]any{"age": 36, "email": "ada@e"}},
{ID: "2", Type: "person", Name: "Alan", Attrs: map[string]any{"age": 41, "email": "alan@e"}},
{ID: "3", Type: "company", Name: "Acme", Attrs: map[string]any{"founded": 1900}},
{ID: "4", Type: "company", Name: "Bcme", Attrs: map[string]any{"founded": 1901}},
{ID: "5", Type: "ghost", Name: "Once"},
},
Links: []Link{
{Type: "works for", From: "1", To: "3", FromType: "person", ToType: "company"},
{Type: "works for", From: "2", To: "4", FromType: "person", ToType: "company"},
},
}
}
func TestClasses(t *testing.T) {
got, err := Inference{}.Classes(observed().Entities)
if err != nil {
t.Fatalf("Classes: %v", err)
}
// "ghost" was seen once and the default floor is two, so it is not a
// class. Class names are normalized; the source type is kept alongside.
if n := names(got); !reflect.DeepEqual(n, []string{"Person", "Company"}) {
t.Fatalf("classes = %v, want [Person Company]", n)
}
p := got[0]
if p.From != "person" || p.Seen != 2 || p.IRI != DefaultBase+"Person" {
t.Errorf("Person = %+v", p)
}
// Attrs are the attributes every instance carried, not the union.
if !reflect.DeepEqual(p.Attrs, []string{"age", "email"}) {
t.Errorf("Person attrs = %v, want [age email]", p.Attrs)
}
// Lowering the floor admits the type seen once.
got, err = Inference{Min: 1}.Classes(observed().Entities)
if err != nil {
t.Fatal(err)
}
if n := names(got); !reflect.DeepEqual(n, []string{"Person", "Company", "Ghost"}) {
t.Errorf("with Min 1: %v, want [Person Company Ghost]", n)
}
}
// Two source types that normalize to one class name are a collision, not a
// merge: folding them silently would lose a distinction the data drew.
func TestClassNameCollision(t *testing.T) {
_, err := Inference{}.Classes([]Entity{
{Type: "person"}, {Type: "person"},
{Type: "Persons"}, {Type: "Persons"},
})
if !errors.Is(err, ErrCollision) {
t.Fatalf("err = %v, want ErrCollision", err)
}
for _, want := range []string{"Person", "person", "Persons"} {
if !strings.Contains(err.Error(), want) {
t.Errorf("error %q does not name %q", err, want)
}
}
}
// A property's endpoints have to be spelled the way the classes are spelled,
// or the schema refers to classes it does not contain.
func TestPropertyEndpointsNameTheClasses(t *testing.T) {
s, err := Inference{}.Schema(observed())
if err != nil {
t.Fatalf("Schema: %v", err)
}
for _, p := range s.Properties {
for _, end := range append(append([]string{}, p.Domain...), p.Range...) {
if strings.Contains(end, ":") { // owl:Thing, xsd:integer and the like
continue
}
if _, ok := s.Class(end); !ok {
t.Errorf("property %q names %q, which is not a class in this schema (classes: %v)",
p.Name, end, names(s.Classes))
}
}
}
}
func TestProperties(t *testing.T) {
g := observed()
classes, err := Inference{}.Classes(g.Entities)
if err != nil {
t.Fatal(err)
}
props, err := Inference{}.Properties(g, classes)
if err != nil {
t.Fatal(err)
}
if got := propNames(props); !reflect.DeepEqual(got, []string{"worksFor", "age", "email", "founded"}) {
t.Fatalf("properties = %v", got)
}
byName := map[string]Property{}
for _, p := range props {
byName[p.Name] = p
}
for _, c := range []struct {
name string
kind Kind
domain, rang []string
seen int
}{
{"worksFor", Object, []string{"Person"}, []string{"Company"}, 2},
{"age", Data, []string{"Person"}, []string{"xsd:integer"}, 2},
{"email", Data, []string{"Person"}, []string{"xsd:string"}, 2},
{"founded", Data, []string{"Company"}, []string{"xsd:integer"}, 2},
} {
p := byName[c.name]
if p.Kind != c.kind {
t.Errorf("%s kind = %q, want %q", c.name, p.Kind, c.kind)
}
if !reflect.DeepEqual(p.Domain, c.domain) {
t.Errorf("%s domain = %v, want %v", c.name, p.Domain, c.domain)
}
if !reflect.DeepEqual(p.Range, c.rang) {
t.Errorf("%s range = %v, want %v", c.name, p.Range, c.rang)
}
if p.Seen != c.seen {
t.Errorf("%s seen %d times, want %d", c.name, p.Seen, c.seen)
}
}
}
// A link with no type at all is still a relation, and a link seen once does
// not make a property.
func TestPropertiesFloor(t *testing.T) {
g := Graph{
Entities: []Entity{
{ID: "1", Type: "person"}, {ID: "2", Type: "person"},
{ID: "3", Type: "person"}, {ID: "4", Type: "person"},
},
Links: []Link{
{From: "1", To: "2"}, {From: "3", To: "4"}, // untyped, twice
{Type: "rare", From: "1", To: "3"}, // typed, once
},
}
classes, _ := Inference{}.Classes(g.Entities)
props, err := Inference{}.Properties(g, classes)
if err != nil {
t.Fatal(err)
}
if got := propNames(props); !reflect.DeepEqual(got, []string{"relatedTo"}) {
t.Errorf("properties = %v, want just relatedTo", got)
}
}
func TestSchema(t *testing.T) {
s, err := Inference{Base: "http://e/"}.Schema(observed())
if err != nil {
t.Fatal(err)
}
if s.IRI != "http://e/" || s.Base != "http://e/" || s.Name != "InferredOntology" || s.Version != "1.0" {
t.Errorf("header = %+v", s)
}
if len(s.Classes) != 2 || len(s.Properties) != 4 {
t.Errorf("%d classes and %d properties, want 2 and 4", len(s.Classes), len(s.Properties))
}
// The inferred schema is a schema: it writes out and reads back.
back, err := ParseTurtle([]byte(s.Turtle()))
if err != nil {
t.Fatalf("an inferred schema did not survive turtle: %v", err)
}
if got := names(back.Classes); !reflect.DeepEqual(got, names(s.Classes)) {
t.Errorf("classes after a round trip = %v, want %v", got, names(s.Classes))
}
}
func TestHierarchy(t *testing.T) {
// Only the roots a vocabulary conventionally provides are inferred.
// Without one present, nothing is invented.
got := Hierarchy([]Class{{Name: "Person"}, {Name: "Company"}})
for _, c := range got {
if c.Parent != "" {
t.Errorf("%s was given the parent %q out of nowhere", c.Name, c.Parent)
}
}
// With a root present, the others hang off it — and the root does not
// become its own parent.
got = Hierarchy([]Class{{Name: "Entity"}, {Name: "Person"}, {Name: "Company"}})
for _, c := range got {
want := "Entity"
if c.Name == "Entity" {
want = ""
}
if c.Parent != want {
t.Errorf("%s parent = %q, want %q", c.Name, c.Parent, want)
}
}
// A parent already stated is left alone.
got = Hierarchy([]Class{{Name: "Entity"}, {Name: "Engineer", Parent: "Person"}})
if got[1].Parent != "Person" {
t.Errorf("a stated parent was overwritten with %q", got[1].Parent)
}
}
func TestCycles(t *testing.T) {
for _, c := range []struct {
name string
classes []Class
want []string
}{
{"none", []Class{{Name: "A"}, {Name: "B", Parent: "A"}}, nil},
{"pair", []Class{{Name: "A", Parent: "B"}, {Name: "B", Parent: "A"}}, []string{"A", "B"}},
{"self", []Class{{Name: "A", Parent: "A"}}, []string{"A"}},
{"longer", []Class{{Name: "A", Parent: "B"}, {Name: "B", Parent: "C"}, {Name: "C", Parent: "A"}}, []string{"A", "B", "C"}},
{"dangling parent is not a cycle", []Class{{Name: "A", Parent: "Ghost"}}, nil},
} {
t.Run(c.name, func(t *testing.T) {
if got := Cycles(c.classes); !reflect.DeepEqual(got, c.want) {
t.Errorf("Cycles = %v, want %v", got, c.want)
}
})
}
}
func TestXSD(t *testing.T) {
for _, c := range []struct {
in any
want string
}{
{1, "xsd:integer"},
{int64(2), "xsd:integer"},
{1.5, "xsd:double"},
{true, "xsd:boolean"},
{"a string", "xsd:string"},
{"2026-01-02", "xsd:date"},
{"2026-01-02T03:04:05", "xsd:dateTime"},
{time.Now(), "xsd:dateTime"},
{nil, "xsd:string"}, // nothing known is a string
{[]int{1}, "xsd:string"}, // and so is anything unrecognised
} {
if got := XSD(c.in); got != c.want {
t.Errorf("XSD(%#v) = %q, want %q", c.in, got, c.want)
}
}
}