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The first commit was the shape. This is the implementation: every stage of the pipeline, the graph and its measures, the type system over it, entailment, deduplication and conflict resolution, the decision layer, the stores and the export formats. Twenty-six thousand lines of Go and sixteen thousand of tests, against no dependency but the standard library. Where the Python reaches for torch, spacy or a database driver, the Go states an interface and reports what is missing rather than pretending. A caller can tell "this build cannot serve that" from "nobody has heard of it", which is the difference between a port and a stub. The deterministic paths are complete and are what the tests exercise; the model-shaped ones are one adapter away. Porting a bug is not parity, so several places now disagree with the original on purpose. The JSON repair that closed a truncated reply counted each bracket kind separately and closed them backwards on the one input it exists for; it now works off a stack and ignores brackets inside strings. The entity patterns joined words with \s, so a heading ran into the sentence beneath it and became one name while the real relation was lost; a name is separated by horizontal space now. Eigenvector centrality ran plain power iteration, which on a bipartite graph swings between the two ends of a sign-paired eigenvalue forever and reported every node in a star as equally central; it iterates with A+I, which moves no eigenvector and settles. Similarity summed its weighted parts in map order, and float addition is not associative, so the same comparison scored differently between runs and duplicate detection returned a different answer each time. An inferred ontology named object-property endpoints by raw source type and data-property endpoints by class, so the schema referred to classes it did not contain. A property with no IRI of its own was minted as a class and came back Pascal-cased, renaming the term on the way out of the document. The command built a pipeline with every stage nil and panicked on each invocation. It is now the composition the package documents, and Run reports a missing ingester instead of dereferencing it. Co-authored-by: Hanzo Dev <[email protected]>
337 lines
11 KiB
Go
337 lines
11 KiB
Go
package ontology
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import (
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"reflect"
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"strings"
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"testing"
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)
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const (
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rdfNS = "http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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rdfsNS = "http://www.w3.org/2000/01/rdf-schema#"
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owlNS = "http://www.w3.org/2002/07/owl#"
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)
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// TestStatements reads the constructs a serializer emits. N-Triples is a
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// subset of the grammar, so the last cases are N-Triples too.
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func TestStatements(t *testing.T) {
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for _, c := range []struct {
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name string
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src string
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want []Statement
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}{
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{
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name: "prefixed names",
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src: `@prefix ex: <http://e/> . ex:a ex:p ex:b .`,
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want: []Statement{{Subject: "http://e/a", Predicate: "http://e/p", Object: "http://e/b"}},
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},
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{
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name: "sparql-style directives take no dot",
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src: "PREFIX ex: <http://e/>\nBASE <http://b/>\nex:a ex:p <rel> .",
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want: []Statement{{Subject: "http://e/a", Predicate: "http://e/p", Object: "http://b/rel"}},
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},
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{
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name: "a is rdf:type",
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src: `<http://a> a <http://C> .`,
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want: []Statement{{Subject: "http://a", Predicate: rdfNS + "type", Object: "http://C"}},
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},
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{
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name: "predicate list",
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src: `<http://a> <http://p> <http://b> ; <http://q> <http://c> .`,
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want: []Statement{
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{Subject: "http://a", Predicate: "http://p", Object: "http://b"},
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{Subject: "http://a", Predicate: "http://q", Object: "http://c"},
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},
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},
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{
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name: "object list",
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src: `<http://a> <http://p> <http://b> , <http://c> .`,
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want: []Statement{
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{Subject: "http://a", Predicate: "http://p", Object: "http://b"},
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{Subject: "http://a", Predicate: "http://p", Object: "http://c"},
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},
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},
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{
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name: "tagged and typed literals",
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src: `<http://a> <http://p> "x"@en , "y"^^<http://t> , "plain" .`,
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want: []Statement{
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{Subject: "http://a", Predicate: "http://p", Object: "x", Literal: true, Lang: "en"},
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{Subject: "http://a", Predicate: "http://p", Object: "y", Literal: true, Datatype: "http://t"},
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{Subject: "http://a", Predicate: "http://p", Object: "plain", Literal: true},
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},
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},
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{
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name: "bare literals carry their xsd datatype",
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src: `<http://a> <http://p> true , 42 , 1.5 .`,
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want: []Statement{
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{Subject: "http://a", Predicate: "http://p", Object: "true", Literal: true, Datatype: xsdNS + "boolean"},
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{Subject: "http://a", Predicate: "http://p", Object: "42", Literal: true, Datatype: xsdNS + "integer"},
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{Subject: "http://a", Predicate: "http://p", Object: "1.5", Literal: true, Datatype: xsdNS + "decimal"},
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},
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},
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{
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name: "long literal spans lines",
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src: "# a comment first\n<http://a> <http://p> \"\"\"multi\nline\"\"\" .",
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want: []Statement{{Subject: "http://a", Predicate: "http://p", Object: "multi\nline", Literal: true}},
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},
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{
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name: "escapes in a literal",
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src: `<http://a> <http://p> "say \"hi\"\nand \\ stop" .`,
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want: []Statement{{Subject: "http://a", Predicate: "http://p", Object: "say \"hi\"\nand \\ stop", Literal: true}},
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},
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{
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name: "blank node property list",
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src: `<http://a> <http://p> [ <http://q> "v" ] .`,
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want: []Statement{
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{Subject: "_:b1", Predicate: "http://q", Object: "v", Literal: true},
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{Subject: "http://a", Predicate: "http://p", Object: "_:b1"},
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},
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},
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{
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name: "labelled blank nodes",
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src: `_:x <http://p> _:y .`,
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want: []Statement{{Subject: "_:x", Predicate: "http://p", Object: "_:y"}},
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},
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{
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name: "collection becomes an rdf list",
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src: `<http://a> <http://p> ( <http://x> <http://y> ) .`,
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want: []Statement{
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{Subject: "_:b1", Predicate: rdfNS + "first", Object: "http://x"},
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{Subject: "_:b1", Predicate: rdfNS + "rest", Object: "_:b2"},
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{Subject: "_:b2", Predicate: rdfNS + "first", Object: "http://y"},
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{Subject: "_:b2", Predicate: rdfNS + "rest", Object: rdfNS + "nil"},
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{Subject: "http://a", Predicate: "http://p", Object: "_:b1"},
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},
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},
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{
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name: "empty collection is rdf:nil",
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src: `<http://a> <http://p> ( ) .`,
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want: []Statement{{Subject: "http://a", Predicate: "http://p", Object: rdfNS + "nil"}},
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},
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{
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name: "empty document",
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src: "# nothing but a comment\n",
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want: nil,
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},
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} {
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t.Run(c.name, func(t *testing.T) {
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got, err := Statements([]byte(c.src))
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if err != nil {
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t.Fatalf("Statements: %v", err)
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}
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if !reflect.DeepEqual(got, c.want) {
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t.Errorf("got %+v\nwant %+v", got, c.want)
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}
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})
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}
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}
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func TestStatementsRefused(t *testing.T) {
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for _, c := range []struct{ name, src, msg string }{
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{"truncated triple", `<http://a> <http://p>`, "unexpected end of input"},
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{"prefix without a colon", `@prefix ex <http://e/> .`, "expected <"},
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{"unclosed iri", `<http://a <http://p> <http://b> .`, ""},
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{"unknown prefix", `ex:a <http://p> <http://b> .`, "prefix"},
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{"unterminated literal", `<http://a> <http://p> "x .`, ""},
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} {
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t.Run(c.name, func(t *testing.T) {
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_, err := Statements([]byte(c.src))
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if err == nil {
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t.Fatal("want an error")
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}
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if !strings.HasPrefix(err.Error(), "turtle: line ") {
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t.Errorf("error %q does not say where it gave up", err)
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}
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if c.msg != "" && !strings.Contains(err.Error(), c.msg) {
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t.Errorf("error = %q, want it to mention %q", err, c.msg)
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}
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})
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}
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}
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const schemaTTL = `@prefix : <https://ex.org/ns#> .
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@prefix owl: <http://www.w3.org/2002/07/owl#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
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<https://ex.org/ns#> a owl:Ontology ;
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rdfs:label "Example" ;
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rdfs:comment "An example" ;
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owl:versionInfo "2.0" .
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:Person a owl:Class ;
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rdfs:label "Person" ;
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rdfs:comment "A human being" .
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:Engineer a owl:Class ;
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rdfs:subClassOf :Person .
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:worksFor a owl:ObjectProperty ;
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rdfs:domain :Person ;
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rdfs:range :Organization .
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:age a owl:DatatypeProperty ;
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rdfs:domain :Person ;
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rdfs:range xsd:integer .
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`
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func TestParseTurtle(t *testing.T) {
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s, err := ParseTurtle([]byte(schemaTTL))
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if err != nil {
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t.Fatalf("ParseTurtle: %v", err)
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}
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if s.IRI != "https://ex.org/ns#" || s.Name != "Example" || s.Comment != "An example" || s.Version != "2.0" {
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t.Errorf("ontology header = %+v", s)
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}
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// Terms are named by the local part of their IRI, which is what the rest
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// of the package indexes by.
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if got := names(s.Classes); !reflect.DeepEqual(got, []string{"Person", "Engineer"}) {
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t.Errorf("classes = %v, want [Person Engineer]", got)
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}
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p, ok := s.Class("Person")
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if !ok || p.Label != "Person" || p.Comment != "A human being" || p.IRI != "https://ex.org/ns#Person" {
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t.Errorf("Person = %+v", p)
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}
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e, _ := s.Class("Engineer")
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if e.Parent != "Person" {
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t.Errorf("Engineer parent = %q, want Person", e.Parent)
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}
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w, ok := s.Property("worksFor")
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if !ok || w.Kind != Object || !reflect.DeepEqual(w.Domain, []string{"Person"}) || !reflect.DeepEqual(w.Range, []string{"Organization"}) {
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t.Errorf("worksFor = %+v", w)
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}
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a, ok := s.Property("age")
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if !ok || a.Kind != Data || !reflect.DeepEqual(a.Range, []string{"xsd:integer"}) {
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t.Errorf("age = %+v", a)
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}
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}
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// A schema written out and read back is the same schema. Turtle, N-Triples
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// and JSON-LD all have to agree on that, or the formats are not saying the
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// same thing.
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func TestRoundTrip(t *testing.T) {
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want := Schema{
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IRI: "http://e/", Name: "ExampleOntology", Comment: "c", Version: "1.0", Base: "http://e/",
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// No Prefixes: reading resolves every prefixed name to its full IRI
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// and does not keep the bindings, and the writers spell every term
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// out in full, so the terms survive and the header does not.
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Classes: []Class{
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{Name: "Person", IRI: "http://e/Person", Label: "Person", Comment: "A person"},
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{Name: "Engineer", IRI: "http://e/Engineer", Label: "Engineer", Parent: "Person"},
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},
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Properties: []Property{
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{Name: "worksFor", IRI: "http://e/worksFor", Kind: Object, Label: "worksFor",
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Domain: []string{"Person"}, Range: []string{"Organization"}},
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{Name: "age", IRI: "http://e/age", Kind: Data, Label: "age",
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Domain: []string{"Person"}, Range: []string{"xsd:integer"}},
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},
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}
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for _, c := range []struct {
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name string
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write func(Schema) ([]byte, error)
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read func([]byte) (Schema, error)
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}{
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{"turtle", func(s Schema) ([]byte, error) { return []byte(s.Turtle()), nil }, ParseTurtle},
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{"ntriples", func(s Schema) ([]byte, error) { return []byte(s.NTriples()), nil }, ParseTurtle},
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{"jsonld", Schema.JSONLD, ParseJSONLD},
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} {
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t.Run(c.name, func(t *testing.T) {
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b, err := c.write(want)
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if err != nil {
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t.Fatalf("write: %v", err)
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}
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got, err := c.read(b)
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if err != nil {
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t.Fatalf("read: %v\n%s", err, b)
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}
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if !reflect.DeepEqual(got, want) {
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t.Errorf("got %+v\nwant %+v\nfrom\n%s", got, want, b)
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}
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})
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}
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}
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// A property with no IRI of its own mints one in camelCase. Minting it the
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// way a class is minted would rewrite worksFor to Worksfor and rename the
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// term on the way out of the document.
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func TestPropertyKeepsItsNameThroughTurtle(t *testing.T) {
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s := Schema{Base: "http://e/", Properties: []Property{{Name: "worksFor", Kind: Object}}}
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ttl := s.Turtle()
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if !strings.Contains(ttl, "<http://e/worksFor> a owl:ObjectProperty") {
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t.Fatalf("turtle does not name the property in camelCase:\n%s", ttl)
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}
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back, err := ParseTurtle([]byte(ttl))
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if err != nil {
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t.Fatal(err)
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}
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if _, ok := back.Property("worksFor"); !ok {
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t.Errorf("property came back as %v, want worksFor", propNames(back.Properties))
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}
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}
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func TestTurtleQuotesAreEscaped(t *testing.T) {
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s := Schema{Base: "http://e/", Classes: []Class{{Name: "C", Comment: `he said "no"` + "\nthen \\ left"}}}
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back, err := ParseTurtle([]byte(s.Turtle()))
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if err != nil {
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t.Fatalf("a comment with a quote in it broke the document: %v\n%s", err, s.Turtle())
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}
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c, _ := back.Class("C")
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if c.Comment != `he said "no"`+"\nthen \\ left" {
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t.Errorf("comment = %q", c.Comment)
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}
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}
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// A prefix the document declared is part of what it said, and both readers
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// report it the same way: the standard bindings are assumed and dropped, the
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// rest are kept, and none at all is a nil map rather than an empty one.
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func TestPrefixesSurviveBothReaders(t *testing.T) {
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s := Schema{
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IRI: "http://e/", Name: "N", Version: "1.0", Base: "http://e/",
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Prefixes: map[string]string{"ex": "http://ex/"},
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Classes: []Class{{Name: "C", IRI: "http://e/C", Label: "C"}},
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}
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for _, c := range []struct {
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name string
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write func(Schema) ([]byte, error)
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read func([]byte) (Schema, error)
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}{
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{"turtle", func(s Schema) ([]byte, error) { return []byte(s.Turtle()), nil }, ParseTurtle},
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{"jsonld", Schema.JSONLD, ParseJSONLD},
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} {
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t.Run(c.name, func(t *testing.T) {
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b, err := c.write(s)
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if err != nil {
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t.Fatal(err)
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}
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got, err := c.read(b)
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if err != nil {
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t.Fatal(err)
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}
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if !reflect.DeepEqual(got.Prefixes, map[string]string{"ex": "http://ex/"}) {
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t.Errorf("prefixes = %v, want just the one the document declared\n%s", got.Prefixes, b)
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}
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})
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}
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// A document that declares nothing beyond the standard prefixes reports
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// no bindings, not an empty set of them.
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for _, c := range []struct {
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name string
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read func([]byte) (Schema, error)
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src []byte
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}{
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{"turtle", ParseTurtle, []byte(schemaTTL)},
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{"jsonld", ParseJSONLD, []byte(`{"@context":{"@vocab":"http://e/"},"@graph":[]}`)},
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} {
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t.Run("none/"+c.name, func(t *testing.T) {
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got, err := c.read(c.src)
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if err != nil {
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t.Fatal(err)
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}
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if got.Prefixes != nil {
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t.Errorf("prefixes = %#v, want nil", got.Prefixes)
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}
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})
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}
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}
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